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The Genomics, Genetics and Breeding. A collaboration among MARS, USDA-ARS, IBM, NCGR, Clemson University,. HudsonAlpha Institute for Biotechnology, Indiana University and Washington State University. Welcome to the Cacao Genome Project.
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Hassle free analysis of next-generation sequencing data. Cloud-based analysis of high-throughput data. Powerful data visualization and annotation capabilities. Largest resource of splicing signals. 3D visualization of domain architecture mapped to exon-intron structures of genes. An integrated database of alternative splicing and transcription events. Dynamic platform to analyze disease causing mutations.
Rapidly align sequences to the genome. Download data from the Genome Browser database. Get functional effect predictions for variant calls. Combine data sources from the Genome Browser database. Find genes that are similar by expression and other metrics. Run the Genome Browser on your laptop or server. Rapidly align PCR primer pairs to the genome. Convert genome coordinates between assemblies.
Top 10 Most Read Articles. Cold Spring Harbor Molecular Case Studies. Cold Spring Harbor Perspectives in Medicine. Cold Spring Harbor Perspectives in Biology. E-mail Alerts and RSS Feeds. Enhancer RNA profiling predicts transcription factor activity. Human-specific splicing switch and hepatocellular carcinoma.
A virtual laboratory for genomics research and training. Use our Galaxy servers and genome browser. Get your own private server in the cloud with Galaxy, command-line bioinformatics, RStudio Server and IPython Notebook. Learn genomics methods using our tutorials.